GenBank link news

Sortable-searchable lists of GenBank numbers associated with certain vouchered collections are being added to the technical tabs of taxon pages on this site.  Data is being collected for the following:
  1. type collections
  2. other original material
  3. material revised by the editors and their students
  4. other material selected at the descretion of the editors
From the sortable-searchable table of the "GenBank nos." data field on the technical tabs of taxon pages, GenBank accession numbers are linked to the relevant GenBank records.  Soon we will also link the unique identifiers of voucher collections to relevant complete collection label data as presented in the "materials examined" data field on the same techtab. This page allows site developers to track what DNA sequence accession numbers and associated data have been posted to date.

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January 23 2012

Updated techtabs: Some GenBank accession numbers for sequences of a variety of loci (nrITS, ??) have been added to the site based on research reported in Wolfe et al. (2012) as follows:
  1. Amanita armillariiformis
  2. A. manicata
  3. A. nauseosa
  4. A. prairiicola
  5. A. silvifuga
  6. A. thiersii
January 20, April 11 2012

GenBank accesssion numbers deposited by Oda et al. as "unpublished" have been added to the site as follows:
  1. Amanita regalis
  2. Amanita sinensis
January 20 2012

GenBank accession numbers deposited in association with publication of (Zhang et al. 2004) have been added to the site as follows:
  1. Amanita altipes
  2. A. atrofusca
  3. A. avellaneosquamosa
  4. A. exitialis
  5. A. fritillaria
  6. A. fuliginea
  7. A. griseofolia
  8. A. liquii
  9. A. manginiana sensu W. F. Chiu
  10. A. orientifulva
  11. A. orientigemmata
  12. A. parvipantherina
  13. A. porphyria
  14. A. pseudogemmata
  15. A. pseudovaginata
  16. A. sepiacea
  17. A. solitaria
  18. A. subfrostiana
  19. A. subjunquillea var. alba
  20. A. yuaniana
  21. Limacella glioderma
January 12 2012

GenBank accession numbers for sequences deposited by L. Tang et al., Key Laboratory for Biodiversity and Biogeography, Kunming Institute of Botany, Yunnan, China, have been added to the site; however, we are probably a several days ahead of the actual posting of the sequences on GenBank.
  1. Amanita vernicoccora
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January 4-5, 8 2012

GenBank accession numbers for sequences from Justo et al. (2010).
  1. Amanita arenaria
  2. A. grandis
  3. A. grandispora
  4. A. inculta
  5. ?A. oleosa
  6. A. pseudoinculta
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January 4 2012

GenBank accession numbers for sequences from diverse sources including Moncalvo et al. (2002).
  1. Amanita armillariiformis
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December 30-31 2011, January 3-4 2012

Updated techtabs: GenBank accession numbers for sequences derived from original material of Amanita ibotengutake and A. griseoturcosa and/or taxa treated phylogenetically in research of Oda et al. (2002).
  1. Amanita concentrica
  2. A. griseoturcosa
  3. A. ibotengutake
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December 30 2011

Updated techtabs: GenBank accession numbers for the endoglucanase gene and the GH family 3 β-glucosidase gene for a variety of Amanita taxa based on research of Wolfe and Pringle, Pringle Lab., Harvard.
  1. Amanita armillariiformis
  2. A. gracilior
  3. A. murinoflammeum
  4. A. parvipantherina
  5. A. prairiicola
  6. A. pudica
  7. A. subcaligata
  8. A. thiersii
  9. A. vittadinii
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December 30 2011

Updated techtabs: GenBank accession numbers for 28S rRNA and nrITS sequences of species of several sections including sect. Lepidella and sect. Phalloideae posted by Dr. H. E. Hallen et al. from unpublished research will be added as the voucher specimens can be identified.
  1. Amanita arocheae
  2. A. cylindrispora
  3. A. gilbertii
  4. A. ocreata
  5. A. phalloides
  6. A. suballiacea
  7. A. virosa
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December 27 2011, January 20-21 2012

Updated techtabs: GenBank accession numbers for species of sect. Phalloideae described or studied in Zhang et al. (2010) are being added to this site.
  1. Amanita fuligineoides
  2. A. kotohiraensis
  3. A. oberwinklerana
  4. A. pallidorosea
  5. A. rimosa
  6. A. subjunquillea
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December 27 2011

Updated techtabs: Some GenBank accession numbers for Amanita phalloides nrITS from Wolfe et al. (2010) are added to this site.
  1. Amanita phalloides
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December 26-27 2011, January 2-3 2012

Updated techtabs: Some GenBank accession numbers for nrLSU. nrITS, EF1-α, and β-tubulin gene sequences from some of the muscariois taxa sequenced at the Molecular Microbial Ecology Lab., Univ. Alaska, Anchorage, as part of research by Dr. J. Geml et al. (2008) are starting to be added to the site:
  1. Amanita muscaria
  2. A. muscaria subsp. flavivolvata (≡A. amerimuscaria nom. prov.)
  3. A. muscaria var. persicina
  4. A. sp-LG458
  5. A. sp-LG862
  6. A. sp-LG1045
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December 20-22 2011

Updated techtabs: Some GenBank accession numbers for partial nrLSU sequences from some of the 49 species sequenced at the Lehrstuhl für Spezielle Botanik und Mykologie as part of research by Dr. M. Weiss et al. (1998) are starting to be added to the site:
  1. Amanita avellaneosquamosa
  2. A. brunneofuliginea
  3. A. bulbosa var. citrina
  4. A. caesarea
  5. A. clarisquamosa
  6. A. farinosa
  7. A. frostiana
  8. A. fuliginea
  9. A. hemibapha var. ochracea
  10. A. incarnatifolia
  11. A. japonica
  12. A. lignitincta
  13. A. longistriata
  14. A. manginiana sensu W. F. Chiu
  15. A. nivalis
  16. A. pantherina
  17. A. pseudovaginata
  18. A. rubrovolvata
  19. A. sinensis
  20. A. subfrostiana
  21. A. subglobosa
  22. A. subjunquillea var. alba
  23. A. verrucosivolva
  24. A. virgineoides
  25. A. volvata
  26. A. yuaniana
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December 18-20 2011, January 5, January 9, January 13, January 23, April 27, April 29, 2012, December 5, 2012

Updated techtabs: Some GenBank accession numbers for sequences of mutiple loci (nrLSU, 18S rRNA, LSU mtrRNA, SSU mtrRNA) from over 100 species sequenced in the Pringle Laboratory at Harvard as part of research by Dr. Benjamin Wolfe are being added to the site:
  1. Amanita afrospinosa
  2. A. armillariiformis
  3. A. atkinsoniana
  4. A. cinereopannosa
  5. A. chlorinosma
  6. A. codinae
  7. A. costaricensis
  8. A. crassiconus
  9. A. daucipes
  10. A. egregia
  11. A. eriophora
  12. A. flavorubens
  13. A. gracilior
  14. A. grallipes
  15. A. hesleri
  16. A. longipes
  17. A. manicata
  18. A. magniverrucata
  19. A. murinoflammeum
  20. A. mutabilis
  21. A. onusta
  22. A. parvipantherina
  23. A. pelioma
  24. A. polypyramis
  25. A. populiphila
  26. A. praelongispora
  27. A. prairiicola
  28. A. proxima
  29. A. pruittii
  30. A. pudica
  31. A. rhopalopus
  32. A. rubescens
  33. A. rubescens var. congolensis
  34. A. silvicola
  35. A. smithiana
  36. A. solitaria
  37. A. sp-Arora-01-560
  38. A. sp-Ridley-2
  39. A. subcaligata
  40. A. subcokeri
  41. A. subsolitaria
  42. A. tephrea
  43. A. thiersii
  44. A. verna
  45. A. vittadinii
  46. A. wellsii
  47. A. westii
  48. A. zambiana
  49. ....
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